Package: segclust2d
Type: Package
Title: Bivariate Segmentation/Clustering Methods and Tools
Version: 0.3.3
Authors@R: c(person("Remi", "Patin", role = c("aut", "cre"), email = "remi.patin@normale.fr"),
             person("Marie-Pierre", "Etienne", role = "aut"), 
             person("Emilie", "Lebarbier", role = "aut"), 
             person("Simon", "Benhamou", role = "aut"))
URL: https://github.com/rpatin/segclust2d
BugReports: https://github.com/rpatin/segclust2d/issues
Description: Provides two methods for segmentation and joint
        segmentation/clustering of bivariate time-series. Originally
        intended for ecological segmentation (home-range and
        behavioural modes) but easily applied on other series, the
        package also provides tools for analysing outputs from R
        packages 'moveHMM' and 'marcher'. The segmentation method is a
        bivariate extension of Lavielle's method available in
        'adehabitatLT' (Lavielle, 1999
        <doi:10.1016/S0304-4149(99)00023-X> and 2005
        <doi:10.1016/j.sigpro.2005.01.012>). This method rely on
        dynamic programming for efficient segmentation. The
        segmentation/clustering method alternates steps of dynamic
        programming with an Expectation-Maximization algorithm. This is
        an extension of Picard et al (2007)
        <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly
        available in 'cghseg' package) to the bivariate case. The
        method is fully described in Patin et al (2018)
        <doi:10.1101/444794>.
License: GPL-3
LazyData: TRUE
RoxygenNote: 7.3.1
Depends: R (>= 3.3.0)
Imports: RColorBrewer (>= 1.1-2), dplyr (>= 1.0.0), plyr (>= 1.8.4),
        reshape2 (>= 1.4.1), ggplot2(>= 2.1.0), magrittr, Rcpp, zoo,
        grDevices, graphics, stats, utils, scales, rlang, methods, cli
Suggests: knitr, rmarkdown, testthat, dygraphs (>= 1.1.1-1), xts (>=
        0.9-7), leaflet (>= 1.0.1), sp (>= 1.2-3), adehabitatLT,
        depmixS4, moveHMM (>= 1.2), htmltools, move, devtools, spelling
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
Config/pak/sysreqs: libicu-dev
Repository: https://rpatin.r-universe.dev
Date/Publication: 2024-04-23 09:06:55 UTC
RemoteUrl: https://github.com/rpatin/segclust2d
RemoteRef: HEAD
RemoteSha: 129179706dc173501deecba0f4fe22d562fe04e3
NeedsCompilation: yes
Packaged: 2026-09-17 09:18:39 UTC; root
Author: Remi Patin [aut, cre],
  Marie-Pierre Etienne [aut],
  Emilie Lebarbier [aut],
  Simon Benhamou [aut]
Maintainer: Remi Patin <remi.patin@normale.fr>